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Don Adjeroh - active/completed projects

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NSF Sponsored Projects

  • EAGER: Computational Public Drug Surveillance, 2012 - 2015
  • EAGER: The CRUFS Framework, 2015 - 2017
  • The following NSF projects are collaborative projects with Professor Amar Mukherjee of University of Central Florida and Professor Tim Bell of University of Canterbury in New Zealand. Various students (both undergraduate and graduate students) were involved in the projects. The projects are listed below:

  • ITR Collaborative: Compressed Search and Retrieval for Very Large Text and Image Repositories, 2003-2007. See abstract and reports
  • International Collaboration in Research on Data Compression, 2004 - 2007. See abstract and reports
  • Collaborative: Compressed Domain Search for Text and Images using Sorted Contexts, CISE, 2002-2005. See abstract and reports
  • Related major publications

  • Don Adjeroh, Tim Bell, and Amar Mukherjee, The Burrows Wheeler Transform: Data Compression, Suffix Arrays, and Pattern Matching , Springer-Verlag, July 2008.
  • Y. Zhang and D.A. Adjeroh, "PPAM: Prediction by partial approximate matching for lossless image compression" , IEEE Transactions on Image Processing, 17(6), pp. 924-935, June 2008.
  • D. A. Adjeroh, U. Kandaswamy, and J. Vernon Odom, "Texton-based segmentation of retinal vessels", Journal of Optical Society of America (JOSA-A), 24(5), May 2007.
  • D. A. Adjeroh, Y. Zhang*, and R. Parthe*, "On denoising and compression of DNA microarray images", Pattern Recognition, vol. 39, no. 12, (Special Issue on Bioinformatics), pp. 2478-2493. Dec. 2006.
  • U. Kandaswamy, D.A. Adjeroh and MC Lee, "Efficient texture analysis of SAR imagery", IEEE Transactions on Geosciences and Remote Sensing, 43(9), 2075- 2083, September 2005.
  • A. Firth, T.C. Bell, A. Mukherjee and D.A. Adjeroh, "A comparison of BWT approaches to string pattern matching", Software-Practi ce and Experience, 35: 1217-1258, May 2005.
  • Sushil K. Jain* and D.A. Adjeroh, "Edge-Based Prediction for Lossless Compression of Hyperspectral Images", Proceedings, IEEE Data Compression Conference, Snowbird, UT, March 2007, pp. 153-162.
  • D.A Adjeroh., U. Kandaswamy*, N. Zhang, A. Mukherjee, M. T. Brown, and T.C. Bell, "BWT-based efficient shape matching", Proc., ACM SAC 2007, South Korea, 2007.
  • F. Nan* and D. A. Adjeroh "An algorithm for suffix sorting and its applications", Proc. IEEE Conference on Computational Systems Bioinformatics, Stanford, CA, August, 2006.
  • N. Zhang, A. Mukherjee, D.A. Adjeroh, and T.C. Bell, "Approximate pattern matching using the Burrows-Wheeler Transform", Proceedi ngs, IEEE Data Compression Conference, March 2003.
  • See also the button for publications

    Related Software

  • BSMP: Simple BWT-based compression program ( download )

  • bwtsearch: Pattern matching on BWT text (requires BSMP) ( download )

  • RKNN: Random KNN Classification and Regression ( link )

  • PSA: Probabilistic suffix array: efficient modeling and prediction of protein families ( download )

  • fWK: Fast Weighted Kendall Correlation ( download )

  • K2 and K2*: Alignment-free Sequence Similarity Measurement ( download )

  • SSAW: Sequence Similarity Analysis using Stationary Discrete Wavelet Transform ( download )

    Related CourseWork


    EE 568 - Information Theory
    CS 791 - String Algorithms
    CS 558 - Multimedia Systems

    Other Projects and Sponsors

    • DOE CAREER Award
    • NASA-WV Space Consortium
    • WV-EPSCOR RCG
    • WV-EPSCOR RGI
    • NSF-CITeR
    • DOD-ONR
    • DHS
    • DOJ/NIJ
    • NHPRC
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